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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92636413_92636838_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
92636413 - 92636838
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TGCCCACTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77.9
38.6
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
74.7
0.56
1
64.9
45.7
Minor 5ss
39.7
-1.2
3.2
56.4
48
Minor BPS
50.7
0.1
2
72.75
43.2

Associated Gene:

Gene:
TAGLN3
Ensembl Gene ID:
ENSAPLG00000003083
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003143
92625485 - 92636954
11470