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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92646448_92646907_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92646448 - 92646907
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
VTTFKRLPIEAQKEIEEKGE
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
ABHD10
Ensembl Gene ID:
ENSAPLG00000003049
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003085
92646106 - 92651824
5719