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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92654373_92655090_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92654373 - 92655090
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
YYDHLKNAYKSPNPLLTFSV
Intron Amino Acid Position:
1186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
PHLDB2
Ensembl Gene ID:
ENSAPLG00000002653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041050
92654232 - 92735941
81710
ENSAPLT00000034045
92654232 - 92718464
64233
ENSAPLT00000020515
92654232 - 92735941
81710
ENSAPLT00000047602
92654232 - 92735941
81710
ENSAPLT00000002716
92654232 - 92708001
53770
ENSAPLT00000045630
92654232 - 92708001
53770