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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92655177_92658492_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92655177 - 92658492
Intron Length:
3316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCAGTTTTAAAA
Flanking Amino Acid:
RNKRTFTYYADKHETKLKGV
Intron Amino Acid Position:
1157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.3
0.86
0.7
86.1
26.6
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
54.3
0.13
1.5
60.32
40

Associated Gene:

Gene:
PHLDB2
Ensembl Gene ID:
ENSAPLG00000002653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034045
92654232 - 92718464
64233
ENSAPLT00000020515
92654232 - 92735941
81710
ENSAPLT00000047602
92654232 - 92735941
81710
ENSAPLT00000002716
92654232 - 92708001
53770
ENSAPLT00000045630
92654232 - 92708001
53770
ENSAPLT00000041050
92654232 - 92735941
81710