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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92658713_92661224_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92658713 - 92661224
Intron Length:
2512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTATGTTAAAA
Flanking Amino Acid:
VKIREKQRAQARPLTRYLPI
Intron Amino Acid Position:
1084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
92.1
0.95
0.6
87.5
22.9
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
54.3
0.13
2.2
72.98
38.7

Associated Gene:

Gene:
PHLDB2
Ensembl Gene ID:
ENSAPLG00000002653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041050
92654232 - 92735941
81710
ENSAPLT00000034045
92654232 - 92718464
64233
ENSAPLT00000020515
92654232 - 92735941
81710
ENSAPLT00000047602
92654232 - 92735941
81710
ENSAPLT00000002716
92654232 - 92708001
53770
ENSAPLT00000045630
92654232 - 92708001
53770