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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92661907_92665284_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92661907 - 92665284
Intron Length:
3378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTGTTTTGTACA
Flanking Amino Acid:
ISACSPDNISSASTSNVARI
Intron Amino Acid Position:
1004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
83.7
0.76
0.9
79.9
37.7
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
51.3
0.03
1.8
67.12
39.9

Associated Gene:

Gene:
PHLDB2
Ensembl Gene ID:
ENSAPLG00000002653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041050
92654232 - 92735941
81710
ENSAPLT00000034045
92654232 - 92718464
64233
ENSAPLT00000020515
92654232 - 92735941
81710
ENSAPLT00000047602
92654232 - 92735941
81710
ENSAPLT00000002716
92654232 - 92708001
53770
ENSAPLT00000045630
92654232 - 92708001
53770