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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92668305_92671309_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92668305 - 92671309
Intron Length:
3005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTATAAAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
KESESRRMHKGKARKGAISH
Intron Amino Acid Position:
1036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
64
0.32
1
60.7
43.6
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
PHLDB2
Ensembl Gene ID:
ENSAPLG00000002653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045630
92654232 - 92708001
53770