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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92673984_92676412_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92673984 - 92676412
Intron Length:
2429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTCCTTTTAACT
Flanking Amino Acid:
FPVSPSSLKEGYISVSEISE
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.7
0.74
0.7
81.3
23.8
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
67.5
0.63
1.3
76.22
41

Associated Gene:

Gene:
PHLDB2
Ensembl Gene ID:
ENSAPLG00000002653
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045630
92654232 - 92708001
53770
ENSAPLT00000034045
92654232 - 92718464
64233
ENSAPLT00000020515
92654232 - 92735941
81710
ENSAPLT00000002716
92654232 - 92708001
53770
ENSAPLT00000047602
92654232 - 92735941
81710