Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92718465_92735793_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

92718465 - 92735793

Intron Length:

17329

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCTCA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

ACTTTGTCAGGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

73.7

33.1

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

0.81

0.7

80.9

24.2

Minor 5ss

38.7

-1.3

2.9

47.9

47.8

Minor BPS

-0.7

2.4

57.58

45.5

Associated Gene:

Gene:

PHLDB2

Ensembl Gene ID:

ENSAPLG00000002653

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047602

92654232 - 92735941

81710

ENSAPLT00000041050

92654232 - 92735941

81710