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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92779896_92782547_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92779896 - 92782547
Intron Length:
2652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
IRGLKNTLVHRNLPMILNWV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
86
0.81
0.7
85.8
28.6
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
PLCXD2
Ensembl Gene ID:
ENSAPLG00000002539
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002548
92779733 - 92798474
18742