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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92782790_92783936_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92782790 - 92783936
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTGTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TAGTTTGTAACT
Flanking Amino Acid:
LQYMWEKKHQVLIFYHYPLC
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
70.2
37.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.2
0.75
0.8
85.4
29.4
Minor 5ss
31.9
-2.1
3.1
38.5
46.8
Minor BPS
57.3
0.31
2
76.03
41.2

Associated Gene:

Gene:
PLCXD2
Ensembl Gene ID:
ENSAPLG00000002539
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002548
92779733 - 92798474
18742