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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92784398_92798311_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92784398 - 92798311
Intron Length:
13914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGGCTG
5'SS Class:
major
3'SS Sequence:
GATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTTCTAAAA
Flanking Amino Acid:
TCPLSNLAIPGSHDSFSYWV
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.4
55.2
49
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.4
0.8
0.8
77.2
41.6
Minor 5ss
28.4
-2.5
3.5
38.1
46.8
Minor BPS
61.3
0.35
1.7
76.84
33.7

Associated Gene:

Gene:
PLCXD2
Ensembl Gene ID:
ENSAPLG00000002539
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002548
92779733 - 92798474
18742