About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92902050_92903953_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92902050 - 92903953
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TGTTTTTCAACA
Flanking Amino Acid:
ASLAHASTTQGELISATETK
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034285
92901405 - 92921919
20515
ENSAPLT00000013857
92900469 - 92921724
21256