About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92907890_92911110_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92907890 - 92911110
Intron Length:
3221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTTTTCATT
Flanking Amino Acid:
QEGPAGTSQKPNVSCIVRKA
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
72.3
0.5
0.9
65.1
36
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
53.7
0.2
1.7
70.08
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034285
92901405 - 92921919
20515
ENSAPLT00000013857
92900469 - 92921724
21256