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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92911167_92914499_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92911167 - 92914499
Intron Length:
3333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTAAT
U12 Branch Point Sequence:
ATTTCGTTAATA
Flanking Amino Acid:
RKSSTTVRVFAYPEISASLQ
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
73.4
37.5
Major BPS
72
0.55
1.2
73.3
39.1
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
33
-1.9
3.2
43.8
43.8
Minor BPS
69.6
0.61
2
81.61
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034285
92901405 - 92921919
20515
ENSAPLT00000013857
92900469 - 92921724
21256