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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93021660_93022197_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93021660 - 93022197
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATGTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
AATTGTTTATTT
Flanking Amino Acid:
ERDTGSLQHMKAMNGRQLTC
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
63.8
0.31
1
61.8
44.3
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
50.9
0.11
2
71.01
40.6

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032295
93021349 - 93088752
67404
ENSAPLT00000046722
93020644 - 93088752
68109
ENSAPLT00000046333
93021349 - 93091878
70530
ENSAPLT00000044419
93021349 - 93088752
67404