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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93022261_93034399_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93022261 - 93034399
Intron Length:
12139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CTTCCACTAACT
Flanking Amino Acid:
SVPQKEAMLQKEHFALQSQC
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
87.4
0.84
0.7
85.1
28.9
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
56.5
0.28
2
79.84
41.4

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032295
93021349 - 93088752
67404
ENSAPLT00000046722
93020644 - 93088752
68109
ENSAPLT00000046333
93021349 - 93091878
70530
ENSAPLT00000044419
93021349 - 93088752
67404