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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9303108_9304046_R

Intron Information:

Intron Rank:
154314
Intron Class:
major
Intron Phase:
Intron Coordinates:
9303108 - 9304046
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77.7
31.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.3
0.82
0.9
84.8
35.6
Minor 5ss
42.6
-0.8
3.1
56.7
42.1
Minor BPS
62.4
0.39
1.5
72.8
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036438
9302950 - 9422336
119387