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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93034482_93035796_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93034482 - 93035796
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TATTTTAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTATTTTAATA
Flanking Amino Acid:
RKKRPSYLDKVIDLPPTQKP
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.4
0.57
0.9
71
38.5
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
67.3
0.54
1.2
70.89
36

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046722
93020644 - 93088752
68109
ENSAPLT00000046333
93021349 - 93091878
70530
ENSAPLT00000044419
93021349 - 93088752
67404
ENSAPLT00000032295
93021349 - 93088752
67404