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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93035936_93042488_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
93035936 - 93042488
Intron Length:
6553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATCACATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
AACTTCATAAAG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75.9
33.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
74.5
0.55
0.9
67
38.5
Minor 5ss
42.5
-0.8
3.1
54.4
45.2
Minor BPS
48.6
-0.2
1.8
53.02
41.3

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036763
93035935 - 93088752
52818