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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93035936_93051033_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93035936 - 93051033
Intron Length:
15098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TATCACATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
AACTTCATAAAG
Flanking Amino Acid:
RTDQKTIYISDVPFKQTSSV
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
74.5
0.55
0.9
67
38.5
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
48.6
-0.2
1.8
53.02
41.3

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046333
93021349 - 93091878
70530
ENSAPLT00000044419
93021349 - 93088752
67404
ENSAPLT00000032295
93021349 - 93088752
67404
ENSAPLT00000046722
93020644 - 93088752
68109