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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93051186_93053897_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93051186 - 93053897
Intron Length:
2712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AACTGTTTCATT
Flanking Amino Acid:
NPLPMELMWTRLDGQWPEGL
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
46.2
-0.2
2.1
62.51
42.5

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046333
93021349 - 93091878
70530
ENSAPLT00000036763
93035935 - 93088752
52818
ENSAPLT00000014108
93042359 - 93088752
46394
ENSAPLT00000046722
93020644 - 93088752
68109