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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93052366_93053897_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93052366 - 93053897
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
ACTGACTTAAAA
Flanking Amino Acid:
NPLPMELMWTSSSRSSICWN
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
84.8
0.78
0.8
81.1
30.9
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
54.8
0.15
1.7
64.03
42

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044419
93021349 - 93088752
67404
ENSAPLT00000032295
93021349 - 93088752
67404