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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93054016_93055920_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93054016 - 93055920
Intron Length:
1905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TACCTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGGTTATTAATG
Flanking Amino Acid:
IRYSHVLDIQYAPEVSVTGY
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
80.1
34.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.2
0.57
1
72.4
37.3
Minor 5ss
41.3
-1
2.8
52.2
44.4
Minor BPS
57.3
0.09
1.7
60.75
41.4

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044419
93021349 - 93088752
67404
ENSAPLT00000036763
93035935 - 93088752
52818
ENSAPLT00000032295
93021349 - 93088752
67404
ENSAPLT00000046722
93020644 - 93088752
68109
ENSAPLT00000014108
93042359 - 93088752
46394
ENSAPLT00000046333
93021349 - 93091878
70530