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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93056218_93061943_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93056218 - 93061943
Intron Length:
5726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAAACTTAATT
Flanking Amino Acid:
AQSSITVTVLVEPVVSLTKG
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.5
0.48
0.8
69.7
30.3
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
69.5
0.69
1.5
83.08
37.6

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032295
93021349 - 93088752
67404
ENSAPLT00000014108
93042359 - 93088752
46394
ENSAPLT00000046722
93020644 - 93088752
68109
ENSAPLT00000046333
93021349 - 93091878
70530
ENSAPLT00000036763
93035935 - 93088752
52818