About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93056218_93087695_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93056218 - 93087695
Intron Length:
31478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
ATCCCTTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAAACTTAATT
Flanking Amino Acid:
LGLLVSRLCCVEPVVSLTKG
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.3
46.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.5
0.48
0.8
69.7
30.3
Minor 5ss
31.6
-2.1
3.3
40.9
44.9
Minor BPS
69.5
0.69
1.5
83.08
37.6

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044419
93021349 - 93088752
67404