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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93062283_93091829_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93062283 - 93091829
Intron Length:
29547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTTGTATACA
Flanking Amino Acid:
SLSFLSSFQRGTLAGPIVDP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.2
0.66
0.9
76.9
37.3
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
46.5
-0.2
2.5
70.34
42.1

Associated Gene:

Gene:
NECTIN3
Ensembl Gene ID:
ENSAPLG00000013541
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046333
93021349 - 93091878
70530