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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9308618_9314440_R

Intron Information:

Intron Rank:
154310
Intron Class:
major
Intron Phase:
Intron Coordinates:
9308618 - 9314440
Intron Length:
5823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GTTAACTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.7
0.8
0.6
85.9
21.2
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
58.2
0.33
1.9
78.89
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017832
9308301 - 9403157
94857