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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9314513_9421713_R

Intron Information:

Intron Rank:
154316
Intron Class:
major
Intron Phase:
Intron Coordinates:
9314513 - 9421713
Intron Length:
107201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GATATTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
53.9
0.2
1.7
70.05
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037680
9314224 - 9421967
107744