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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93166340_93171366_R

Intron Information:

Intron Rank:
129147
Intron Class:
major
Intron Phase:
Intron Coordinates:
93166340 - 93171366
Intron Length:
5027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040599
93159559 - 93171946
12388
ENSAPLT00000026273
93165204 - 93171946
6743