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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93171506_93171598_R

Intron Information:

Intron Rank:
129148
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
93171506 - 93171598
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAGG
5'SS Class:
major
3'SS Sequence:
TTATGGTGTCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGAGCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
69.2
41.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
58.9
0.2
1.2
56.3
47.7
Minor 5ss
34.6
-1.8
2.9
41
39.2
Minor BPS
68.3
0.65
1.4
77.22
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026273
93165204 - 93171946
6743