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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93173640_93173751_F

Intron Information:

Intron Rank:
127008
Intron Class:
major
Intron Phase:
Intron Coordinates:
93173640 - 93173751
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTAGCTC
5'SS Class:
major
3'SS Sequence:
TTTCCTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TCTTTCCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1
58.9
39.9
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
85.7
0.8
0.8
77.8
35.2
Minor 5ss
35.3
-1.7
3.5
49.6
47
Minor BPS
50.7
0
1.9
66.11
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018452
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020084
93172950 - 93186247
13298