Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93175745_93183078_F

Intron Information:

Intron Rank:

127010

Intron Class:

major

Intron Phase:

Intron Coordinates:

93175745 - 93183078

Intron Length:

7334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TATTCATATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TACTCTTGAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.1

28.6

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

76.5

0.6

70.3

39.2

Minor 5ss

40.4

-1.1

3.2

57.3

47.4

Minor BPS

61.6

0.44

1.6

75.41

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020084

93172950 - 93186247

13298