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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93175745_93185629_F

Intron Information:

Intron Rank:
127007
Intron Class:
major
Intron Phase:
Intron Coordinates:
93175745 - 93185629
Intron Length:
9885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAATCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85
0.79
0.6
84.9
22.8
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
55.5
0.25
1.8
74.62
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018452
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019472
93175161 - 93186058
10898