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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9324235_9421713_R

Intron Information:

Intron Rank:
154313
Intron Class:
major
Intron Phase:
Intron Coordinates:
9324235 - 9421713
Intron Length:
97479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTCCTCTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.3
0.77
0.7
79.9
25.7
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
57.7
0.24
1.6
67.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030524
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023061
9324165 - 9421967
97803