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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93395482_93397588_F

Intron Information:

Intron Rank:
147962
Intron Class:
major
Intron Phase:
Intron Coordinates:
93395482 - 93397588
Intron Length:
2107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CATTCTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
75.1
34.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.2
0.7
0.9
73.9
40.5
Minor 5ss
42.2
-0.9
2.4
48.9
42.2
Minor BPS
61.6
0.36
1.6
67.86
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019141
93395429 - 93403754
8326