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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93397648_93403544_F

Intron Information:

Intron Rank:
147963
Intron Class:
major
Intron Phase:
Intron Coordinates:
93397648 - 93403544
Intron Length:
5897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.8
0.89
0.7
89.4
26.6
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044863
93397553 - 93407294
9742
ENSAPLT00000019141
93395429 - 93403754
8326