About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93424489_93425154_F

Intron Information:

Intron Rank:
147969
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
93424489 - 93425154
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTAAAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTCCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
58.7
0.2
1.1
61.5
37
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
88
1.19
1.1
93.09
25.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040428
93424316 - 93446001
21686