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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93430818_93432860_F

Intron Information:

Intron Rank:
147966
Intron Class:
major
Intron Phase:
Intron Coordinates:
93430818 - 93432860
Intron Length:
2043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
ATTCCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
71.7
0.49
0.9
69.9
34.3
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
73.3
0.81
1.3
85.47
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030750
93406113 - 93446001
39889