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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93432940_93444810_F

Intron Information:

Intron Rank:
147967
Intron Class:
major
Intron Phase:
Intron Coordinates:
93432940 - 93444810
Intron Length:
11871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
68
0.4
1.7
80.5
36.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045494
93406113 - 93445357
39245
ENSAPLT00000040428
93424316 - 93446001
21686
ENSAPLT00000030750
93406113 - 93446001
39889