About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93444942_93445888_F

Intron Information:

Intron Rank:
147972
Intron Class:
major
Intron Phase:
Intron Coordinates:
93444942 - 93445888
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
AGATCTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
68.6
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.8
0.51
0.9
69.7
40.7
Minor 5ss
39.6
-1.2
2.9
45.7
43.5
Minor BPS
70.8
0.65
1.5
81.76
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040428
93424316 - 93446001
21686