Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93468391_93469866_R

Intron Information:

Intron Rank:

136860

Intron Class:

major

Intron Phase:

Intron Coordinates:

93468391 - 93469866

Intron Length:

1476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTTT

5'SS Class:

strong_major

3'SS Sequence:

TGGCTTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGTAT

U12 Branch Point Sequence:

TGTGCTTTACTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

81.9

32.1

Major BPS

62.7

0.32

1.4

63.4

Major PPT

78.4

0.64

0.9

69.5

41.7

Minor 5ss

-0.9

3.5

64.1

47.4

Minor BPS

56.8

0.21

1.7

67.25

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021125

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047598

93467804 - 93470000

2197