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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93529508_93531292_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93529508 - 93531292
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTTCTAAAA
Flanking Amino Acid:
KSFAFDPLITSDNVRPYMDM
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.9
38.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.8
73.2
37
Minor 5ss
36.2
-1.6
3.2
47.9
47.5
Minor BPS
56.2
0.19
1.7
70.2
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030431
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019497
93529429 - 93539604
10176