About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93570027_93574846_F

Intron Information:

Intron Rank:
140840
Intron Class:
major
Intron Phase:
Intron Coordinates:
93570027 - 93574846
Intron Length:
4820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCAAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTCTCCAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
66.1
0.36
0.9
59
35.5
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
51.7
0.13
2
77.59
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025857
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040174
93569067 - 93576663
7597