About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93574942_93575809_F

Intron Information:

Intron Rank:
140841
Intron Class:
major
Intron Phase:
Intron Coordinates:
93574942 - 93575809
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
TCCTTGCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTGGCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
77.8
31.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.7
0.56
0.9
68.6
36.5
Minor 5ss
35.3
-1.7
2.7
39.2
40.4
Minor BPS
48.4
-0.1
2.1
62.5
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025857
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040174
93569067 - 93576663
7597