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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93614039_93635367_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93614039 - 93635367
Intron Length:
21329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACATTATTAAAT
Flanking Amino Acid:
QVFQIFDMNQDGFIDFLEFI
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.8
0.72
0.7
81
24.1
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
55
0.23
1.7
69.56
40.8

Associated Gene:

Gene:
GUCA1C
Ensembl Gene ID:
ENSAPLG00000022174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038326
93613069 - 93641881
28813