About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93659948_93660370_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93659948 - 93660370
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCCT
5'SS Class:
major
3'SS Sequence:
TCTTTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTGTTCTAACC
Flanking Amino Acid:
VASINRILEWYNRPFEDDFL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.9
0.76
0.8
84.6
30.4
Minor 5ss
27.5
-2.6
3.2
31.7
42.2
Minor BPS
59.6
0.28
1.8
74.1
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013802
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014376
93659870 - 93679862
19993