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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93660273_93660370_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
93660273 - 93660370
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTCAGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTGTTCTAACC
Flanking Amino Acid:
MPVRQHHAYNRPFEDDFL
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.4
66.5
40.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.9
0.76
0.8
84.6
30.4
Minor 5ss
43.1
-0.8
2.9
63.5
40.8
Minor BPS
59.6
0.28
1.8
74.1
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013802
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014374
93660181 - 93679862
19682