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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93686737_93690277_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
93686737 - 93690277
Intron Length:
3541

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAAGAAAG
5'SS Class:
major
3'SS Sequence:
GTCTTAAATAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CGGTCTTAAATA
Flanking Amino Acid:
ILNISHYMKKNLLCDFKISF
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
67.6
43.5
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
58.3
0.19
1.2
57.6
40.7
Minor 5ss
24.2
-3
3.7
31.8
36
Minor BPS
53.1
0.09
1.7
59.03
41.8

Associated Gene:

Gene:
TRAT1
Ensembl Gene ID:
ENSAPLG00000013835
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014405
93684563 - 93690375
5813