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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93693688_93715852_F

Intron Information:

Intron Rank:
143290
Intron Class:
major
Intron Phase:
Intron Coordinates:
93693688 - 93715852
Intron Length:
22165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTTCCTTTCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
88.6
0.87
0.7
80.8
31.1
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
49.2
-0
3.6
82.88
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042500
93693256 - 93716969
23714